NDBL / HECIL
Hybrid Error Correction of Long Reads using Iterative Learning
☆10Updated 6 years ago
Alternatives and similar repositories for HECIL:
Users that are interested in HECIL are comparing it to the libraries listed below
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆16Updated 2 months ago
- ☆13Updated last year
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- This is the Haplotypo repository☆20Updated 9 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- Convert HAL to VG☆22Updated 7 months ago
- ☆18Updated 3 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago