NDBL / HECILLinks
Hybrid Error Correction of Long Reads using Iterative Learning
☆10Updated 7 years ago
Alternatives and similar repositories for HECIL
Users that are interested in HECIL are comparing it to the libraries listed below
Sorting:
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- Convert HAL to VG☆23Updated last year
- Find Unique genomic Regions☆32Updated last month
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- ☆14Updated last year
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆26Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- ☆19Updated last month
- ☆14Updated last year
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- ☆16Updated 7 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- profile the repeat landscape in a genome☆16Updated 11 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Linear-time de novo Long Read Assembler☆41Updated last month