NDBL / HECILLinks
Hybrid Error Correction of Long Reads using Iterative Learning
☆10Updated 6 years ago
Alternatives and similar repositories for HECIL
Users that are interested in HECIL are comparing it to the libraries listed below
Sorting:
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Convert HAL to VG☆22Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Variant call adjudication☆16Updated 11 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 5 months ago
- ☆18Updated 6 months ago
- ☆15Updated 7 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆26Updated 3 years ago
- ☆14Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Updated 3 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago