harisankarsadasivan / RawMapLinks
Complements Minimap2 for a fast and efficient Read-Until pipeline
☆12Updated 2 years ago
Alternatives and similar repositories for RawMap
Users that are interested in RawMap are comparing it to the libraries listed below
Sorting:
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆28Updated 5 months ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 9 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆34Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆26Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆14Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- Convert HAL to VG☆22Updated last year
- Identifying repeats in high-throughput sequencing data☆16Updated last year