Alternatives and similar repositories for RawMap

Users that are interested in RawMap are comparing it to the libraries listed below

• VGP / vgp-tools
  ☆28Updated 8 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 5 months ago
• LeiHaoa / RabbitVar
  An Fast variant calling tool to detection germline and somatic variants
  ☆11Updated 2 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• jfarek / alignstats
  Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
  ☆19Updated last year
• jts / mbtools
  ☆14Updated 2 years ago
• Minimap2onGPU / mm2-gb
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆23Updated 3 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆20Updated 4 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• medvedevgroup / BubbZ
  ☆15Updated 5 years ago
• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆40Updated 4 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• TGatter / LazyB
  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
  ☆19Updated 3 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆17Updated 4 years ago