Alternatives and similar repositories for RawMap

Users that are interested in RawMap are comparing it to the libraries listed below

• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 9 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated 9 months ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• DecodeGenetics / graphtyper-pipelines
  Recommended Graphtyper pipelines
  ☆15Updated 4 years ago
• TGatter / LazyB
  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
  ☆19Updated 3 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆51Updated 6 years ago
• COV-IRT / SARS-CoV-2_workshop
  ☆20Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 9 years ago
• LeiHaoa / RabbitVar
  An Fast variant calling tool to detection germline and somatic variants
  ☆11Updated 2 years ago
• TavorB / spectral_jaccard_similarity
  ☆15Updated 3 years ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated 2 years ago
• jfarek / alignstats
  Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
  ☆19Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 months ago
• AlgoLab / galig
  A graph aligner
  ☆29Updated last year
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆29Updated 4 years ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 7 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 8 months ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated last month
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago