zhixingfeng / iGDALinks
Detect and phase minor SNVs from long-read sequencing data
☆14Updated 3 years ago
Alternatives and similar repositories for iGDA
Users that are interested in iGDA are comparing it to the libraries listed below
Sorting:
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆21Updated 3 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Convert HAL to VG☆22Updated 9 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 11 months ago
- ☆17Updated last year
- SV calling for diploid assemblies☆27Updated last year
- General purpose utility related to GAF files☆28Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆19Updated 3 months ago
- ☆14Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 6 months ago