ThomasTaus / poolSeq
Analyze and simulate Pool-Seq time series data
☆15Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for poolSeq
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 6 months ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- General purpose population genetics software☆12Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 3 months ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆14Updated last month
- assembly evaluation tool☆34Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- The MafFilter genome alignment processor☆17Updated 2 months ago
- FastK based version of Merqury☆22Updated 3 weeks ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 5 months ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Deleterious mutation prediction pipeline☆14Updated 10 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆15Updated 4 years ago
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated last month
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 9 years ago
- Genome alignment and synteny plots☆27Updated last year
- Haploidy and Size Completeness Estimation☆13Updated 7 months ago