Analyze and simulate Pool-Seq time series data
☆18Jun 16, 2022Updated 4 years ago
Alternatives and similar repositories for poolSeq
Users that are interested in poolSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Mar 5, 2022Updated 4 years ago
- A tool for pangenome graph-based phased diploid genome inference.☆10Sep 19, 2026Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- ☆26Aug 10, 2021Updated 5 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GPU accelerated population genetics statistics package☆34Updated this week
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Sep 27, 2019Updated 7 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 3 weeks ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Oct 5, 2020Updated 6 years ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆51Sep 25, 2026Updated last month
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 6 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 10 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- run-length BWT tools for genomic sequences☆18May 19, 2022Updated 4 years ago
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated 2 weeks ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆74Mar 27, 2026Updated 7 months ago
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- ☆16Jan 5, 2018Updated 8 years ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆14Feb 19, 2020Updated 6 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 11 months ago
- ☆11Mar 4, 2025Updated last year
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- Quickly get coverage statistics given reads and an assembly☆18May 13, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated 2 years ago
- genotype dimensionality reduction with a VAE☆50Mar 11, 2025Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 7 years ago
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago