ThomasTaus / poolSeq
Analyze and simulate Pool-Seq time series data
☆15Updated 2 years ago
Related projects: ⓘ
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆16Updated 5 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- The MafFilter genome alignment processor☆17Updated this week
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆12Updated 4 months ago
- Deleterious mutation prediction pipeline☆14Updated 8 months ago
- Likelihood-based Selective Sweep Detection☆35Updated 11 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 3 years ago
- Genome alignment and synteny plots☆27Updated last year
- General purpose population genetics software☆12Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- use paired-end transcriptome reads to scaffold genomes☆10Updated 5 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated last year
- FastK based version of Merqury☆18Updated last week
- SNP/Genotype calling based on ANGSD && downstream analyses☆9Updated 9 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated last month
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆21Updated last week
- assembly evaluation tool☆34Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 3 years ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆13Updated last year
- Chromosome-level synteny plotting using orthologous regions☆26Updated this week
- ☆18Updated 5 months ago