bioinfo-ut / GeneToCNLinks
Gene copy number prediction from k-mer frequencies
☆14Updated last year
Alternatives and similar repositories for GeneToCN
Users that are interested in GeneToCN are comparing it to the libraries listed below
Sorting:
- ☆13Updated 5 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- ☆16Updated 3 years ago
- Phasing reads with secondary alignments☆21Updated 10 months ago
- ☆14Updated 2 years ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- ☆14Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆17Updated 2 months ago
- ☆16Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆32Updated 4 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- Genome Assembly 102☆14Updated 6 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆11Updated 4 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 10 months ago
- ☆20Updated last year
- ☆12Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- ☆16Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Tandem repeat genotyping with long reads☆32Updated last month
- Long Read Based SV Calling Tools Analysis☆14Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago