GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
☆42Apr 30, 2025Updated last year
Alternatives and similar repositories for WFA-GPU
Users that are interested in WFA-GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 9 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆218Mar 18, 2026Updated 3 months ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆17Sep 4, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 4 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Fast Approximate Pattern Matching using Search Schemes☆17Mar 27, 2026Updated 3 months ago
- Improved version of the Oxford Bioinformatics paper template☆28Feb 4, 2026Updated 5 months ago
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆19Dec 16, 2022Updated 3 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆56Mar 7, 2025Updated last year
- ☆20Nov 17, 2025Updated 7 months ago
- Yet another k-mer analyzer☆173Dec 30, 2025Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- ☆52Jul 27, 2022Updated 3 years ago
- ETHZ Heterogeneous Accelerated Compute Cluster.☆41Jun 12, 2026Updated 3 weeks ago
- AIM, A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.or…☆22Apr 12, 2023Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆30May 5, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 7 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- ☆17Mar 21, 2023Updated 3 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- ☆27Dec 29, 2020Updated 5 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 weeks ago
- An extensible and performant aligner and read mapper