GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment
☆42Apr 30, 2025Updated last year
Alternatives and similar repositories for WFA-GPU
Users that are interested in WFA-GPU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metag…☆18Sep 4, 2024Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Jan 31, 2020Updated 6 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 7 months ago
- LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.☆30Sep 23, 2022Updated 4 years ago
- BWA-MEM program accelerated with the GPUSeed and GASAL2 libraries☆18Dec 16, 2022Updated 3 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆31May 5, 2025Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling☆15Nov 6, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Fast Approximate Pattern Matching using Search Schemes☆20Jul 11, 2026Updated 2 months ago
- ☆53Jul 27, 2022Updated 4 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 5 years ago
- base-level dotplots from PAF alignments☆36Sep 18, 2025Updated last year
- Fast alignment tool based on bwa-mem☆29Feb 22, 2026Updated 7 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 2 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Aug 27, 2026Updated 3 weeks ago
- Yet another k-mer analyzer☆177Dec 30, 2025Updated 8 months ago
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆17Jan 22, 2026Updated 8 months ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆37Jul 15, 2026Updated 2 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- Bidirectional WFA (Paper)☆51May 20, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 8 months ago
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆36Dec 9, 2024Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago