Alternatives and similar repositories for 2015-shell-genomics

Users that are interested in 2015-shell-genomics are comparing it to the libraries listed below

• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 9 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• datacarpentry / rnaseq-data-analysis-ARCHIVED
  ☆10Updated 10 years ago
• pachterlab / kallisto-sleuth-workshop-2016
  materials and website for the 2016 kallisto sleuth workshop
  ☆11Updated 8 years ago
• nellore / runs
  Scripts for reproducing analyses of large RNA-seq datasets
  ☆15Updated 6 years ago
• leekgroup / regionReport
  Generate HTML report for a set of genomic regions or DESeq2/edgeR results
  ☆10Updated 6 months ago
• vsbuffalo / makefiles-in-bioinfo
  A talk on Makesfiles in bioinformatics
  ☆26Updated 12 years ago
• jamesware / alleleFrequencyApp
  Allele frequency filter app
  ☆14Updated 3 years ago
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• smped / ngsReports
  ☆22Updated last month
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• flo-compbio / genometools
  GenomeTools: Scripts and Classes for Working with Genomic Data
  ☆12Updated 7 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• mikelove / asthma
  RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)
  ☆19Updated 7 years ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 7 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆31Updated 3 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• gagneurlab / RNAseq-ASHG
  RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows
  ☆17Updated 3 years ago
• ma-compbio / Weaver
  Allele-Specific Quantification of Structural Variations in Cancer Genomes
  ☆18Updated 6 years ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆15Updated last month
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 8 months ago
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated last month
• davemcg / SeeGEM
  Interactive table from gemini output
  ☆10Updated 6 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago