Lesson for the shell for genomics
☆11Jan 12, 2021Updated 5 years ago
Alternatives and similar repositories for 2015-shell-genomics
Users that are interested in 2015-shell-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- Presentation and exercises for the Software Sustainability Institute Research Data Visualisation Workshop (RDVW)☆15Apr 10, 2018Updated 8 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- An R package to detect selection in biological pathways☆14Jan 19, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- API for California's state code. Uses rails-api and Elasticsearch.☆10Jul 13, 2015Updated 11 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- Parsing and evaluating gene annotation and spliced alignment☆29Jul 22, 2025Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A repository containing notebooks from my talk at PyData Seattle☆10Jul 7, 2017Updated 9 years ago
- A collection of scripts for teaching and learning basic text mining methods in R☆10Sep 10, 2018Updated 7 years ago
- Talks, slides, notebooks, and code snippets☆13May 8, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 9 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Tutorial on programming or "big data"/bioinformatics☆32Jan 5, 2018Updated 8 years ago
- pdftables☆17Aug 21, 2017Updated 8 years ago
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- ☆11Mar 8, 2026Updated 5 months ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 5 months ago
- ☆10Dec 28, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Partnering with Stanford Legal Design Lab students on tools to help tenants facing eviction☆11Oct 17, 2020Updated 5 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations f…☆14Jul 19, 2021Updated 5 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago