ngs-docs / 2015-shell-genomics
Lesson for the shell for genomics
☆10Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for 2015-shell-genomics
- ☆18Updated 8 years ago
- ☆10Updated 9 years ago
- CLI to automate Nextflow pipeline testing☆11Updated 3 weeks ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 11 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 6 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago
- A utility for splitting mixed origin NGS reads☆10Updated 3 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 12 years ago
- HGNC Comparison of Orthology Predictions (HCOP)☆14Updated 6 years ago
- Allele frequency filter app☆14Updated 2 years ago
- Interactive table from gemini output☆10Updated 5 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 3 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 5 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- A talk on Makesfiles in bioinformatics☆26Updated 11 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- Rapid and accurate ancestry inference using SNVs.☆14Updated 6 months ago
- ☆16Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Updated 4 years ago