Alternatives and similar repositories for miniSNV

Users that are interested in miniSNV are comparing it to the libraries listed below

• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated 3 weeks ago
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆21Updated 9 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆35Updated last year
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated 2 years ago
• gcgreenberg / LexicHash
  A novel method for sequence similarity estimation
  ☆28Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 months ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆39Updated 3 months ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆24Updated this week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated last month
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 4 months ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• hitbc / gcSV
  ☆21Updated 10 months ago
• huangnengCSU / NanoSNP
  A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.
  ☆21Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 5 years ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 8 months ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 4 years ago
• collaborativebioinformatics / STRdust
  ☆13Updated 3 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 5 years ago
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 4 months ago
• ACEnglish / usable_vcf
  Run multiple programs to check if a VCF is usable
  ☆11Updated 5 years ago
• Baohua-Chen / GFFx
  A Rust-Based suite of utilities for ultra-fast genomic feature extraction
  ☆40Updated 2 weeks ago