CuiMiao-HIT / miniSNV
☆17Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for miniSNV
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- Find Unique genomic Regions☆29Updated this week
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- ☆12Updated 7 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- ☆22Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆40Updated this week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- transposable element typing pipeline☆16Updated 8 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Convert HAL to VG☆21Updated 3 months ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- De novo construction of isoforms from long-read data☆17Updated this week
- an interactive web viewer for reference pangenome graphs☆23Updated last week
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆39Updated this week
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- ☆20Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆16Updated 6 months ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆13Updated 4 years ago
- ☆32Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago