nextgenusfs / redmask
Genome assembly soft-masking using Red (REpeat Detector)
☆17Updated 6 years ago
Alternatives and similar repositories for redmask
Users that are interested in redmask are comparing it to the libraries listed below
Sorting:
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- The MafFilter genome alignment processor☆18Updated this week
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- ☆23Updated 8 months ago
- ☆27Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆30Updated 5 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 7 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 weeks ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Convert HAL to VG☆22Updated 9 months ago
- Consensus genome annotation using OMA☆24Updated last week
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago