nextgenusfs / redmaskLinks
Genome assembly soft-masking using Red (REpeat Detector)
☆18Updated 6 years ago
Alternatives and similar repositories for redmask
Users that are interested in redmask are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- ☆27Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- SV calling for diploid assemblies☆28Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- ☆31Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Consensus genome annotation using OMA☆26Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Convert HAL to VG☆22Updated 11 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆28Updated 10 months ago
- Differential k-mer analysis☆36Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 5 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆26Updated 11 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 10 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago