Alternatives and similar repositories for physlr

Users that are interested in physlr are comparing it to the libraries listed below

• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• RitchieLabIGH / iMOKA
  interactive Multi Objective K-mer Analysis
  ☆23Updated 2 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• fawaz-dabbaghieh / bubble_gun
  ☆40Updated 3 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• CuiMiao-HIT / miniSNV
  ☆19Updated 11 months ago
• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆39Updated 4 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆35Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• VGP / vgp-tools
  ☆28Updated 6 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 5 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 2 months ago
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 3 months ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 2 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆22Updated 3 weeks ago
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆15Updated 2 weeks ago
• lh3 / gffio
  ☆32Updated 2 years ago
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆24Updated 5 months ago