bcgsc / physlrLinks
Construct a Physical Map from Linked Reads
☆18Updated last year
Alternatives and similar repositories for physlr
Users that are interested in physlr are comparing it to the libraries listed below
Sorting:
- General purpose utility related to GAF files☆29Updated last month
- ☆28Updated 6 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆40Updated 2 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- ☆26Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 2 months ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- Find Unique genomic Regions☆30Updated last month
- GBWT-based handle graph☆31Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last month
- ☆16Updated 3 years ago
- Phased structural variant discovery in pangenomes☆36Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- Convert HAL to VG☆22Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated 11 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- ☆28Updated last year
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- This is the Haplotypo repository☆22Updated last year