Alternatives and similar repositories for BigLD:

Users that are interested in BigLD are comparing it to the libraries listed below

• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 9 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 2 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated last year
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 9 months ago
• cancerit / telomerecat
  Telomerecat: The telomere computational analysis tool
  ☆20Updated 3 years ago
• talkowski-lab / rCNV2
  Aggregation and analyses of rare CNVs across diseases
  ☆14Updated 2 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated 3 weeks ago
• knmkr / lift-over-vcf
  UCSC liftOver (genome build converter) for vcf format
  ☆12Updated 7 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆27Updated 2 years ago
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆21Updated 2 years ago
• birneylab / flexlmm
  Flexible linear mixed model framework for Genome Wide Association Studies
  ☆19Updated 2 months ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆23Updated 4 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 9 months ago
• hoffmangroup / umap
  ☆26Updated last month
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆18Updated 8 years ago
• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆15Updated 2 years ago
• wyguo / TSIS
  TSIS: an R package to infer time-series isoform switch of alternative splicing
  ☆3Updated last year
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆31Updated 2 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆17Updated 2 years ago