☆22Jul 7, 2022Updated 3 years ago
Alternatives and similar repositories for BigLD
Users that are interested in BigLD are comparing it to the libraries listed below
Sorting:
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 10 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Jul 22, 2025Updated 7 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 10 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- ☆10Dec 28, 2023Updated 2 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 weeks ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Hitting associations with k-mers☆44May 14, 2022Updated 3 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 7 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 6 years ago
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated 10 months ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Whole Exome/Whole Genome Sequencing alignment pipeline☆30Sep 18, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- SV genotyper for long reads with a variation graph☆15Aug 11, 2025Updated 6 months ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 9 months ago
- A JBrowse plugin for plotting multiple bigwig subtracks☆12Feb 13, 2022Updated 4 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated last month
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Genome-Phenome Wide Association Study☆15Feb 7, 2023Updated 3 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 3 weeks ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated 10 months ago