Alternatives and similar repositories for BigLD

Users that are interested in BigLD are comparing it to the libraries listed below

• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆33Updated 3 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 9 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• MorrellLAB / sequence_handling
  A series of scripts to automate sequence workflows
  ☆19Updated last week
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• cancerit / telomerecat
  Telomerecat: The telomere computational analysis tool
  ☆21Updated 4 years ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆37Updated 9 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated last week
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 5 months ago
• slzarate / parliament2
  Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data
  ☆22Updated 4 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated 10 months ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆38Updated 3 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated 6 months ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 7 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• jbelyeu / unfazed
  Unfazed by genomic variant phasing
  ☆27Updated last year
• gosianow / DRIMSeq
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…
  ☆12Updated 5 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated 3 weeks ago
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 5 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 10 months ago
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated 2 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 8 months ago
• applevir / STEAK
  Specific Transposable Element Aligner (HERV-K)
  ☆16Updated 6 years ago