Gaius-Augustus / clamsa
ClaMSA (Classify Multiple Sequence Alignments).
☆13Updated 5 months ago
Alternatives and similar repositories for clamsa:
Users that are interested in clamsa are comparing it to the libraries listed below
- Convert HAL to VG☆22Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- General purpose utility related to GAF files☆24Updated 2 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- Benchmark structural variant calls against a reference set☆17Updated 6 months ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- ☆32Updated 2 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆21Updated 5 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- ☆16Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 10 months ago
- ☆17Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- transposable element typing pipeline☆17Updated last year
- ☆26Updated 3 years ago
- Variant call verification☆16Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Reference bias measuring toolkit☆18Updated 2 weeks ago
- A K-mer classifier for HiFi reads☆9Updated last year