Gaius-Augustus / clamsaLinks
ClaMSA (Classify Multiple Sequence Alignments).
☆13Updated last year
Alternatives and similar repositories for clamsa
Users that are interested in clamsa are comparing it to the libraries listed below
Sorting:
- ☆15Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Convert HAL to VG☆23Updated last year
- Variant call verification☆16Updated 7 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated last week
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- General purpose utility related to GAF files☆29Updated 3 weeks ago
- ☆16Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- GBWT-based handle graph☆31Updated last week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- Variant call adjudication☆16Updated last year
- ☆10Updated 9 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- ☆13Updated 6 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- run-length BWT tools for genomic sequences☆19Updated 3 years ago
- Removing PCR duplicates for sequencing reads.☆14Updated 5 years ago
- convert CHAIN format to PAF format☆15Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last year
- ☆26Updated 4 years ago
- ☆10Updated 5 years ago