phiweger / nanotextLinks
Proteins as words, genomes as documents.
☆20Updated 4 years ago
Alternatives and similar repositories for nanotext
Users that are interested in nanotext are comparing it to the libraries listed below
Sorting:
- Align sequences and then parse features.☆18Updated 2 months ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Updated 13 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆40Updated 3 weeks ago
- Library for visualising genomic features in Python.☆15Updated 8 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs…☆14Updated 4 years ago
- SRA python tools☆11Updated 4 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Updated 4 months ago
- ☆11Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 2 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)☆14Updated 2 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Updated 5 years ago
- Parsing MHC nomenclature in the wild☆16Updated 3 months ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆13Updated 3 years ago
- Sequencing analysis pipeline☆15Updated last week
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 5 months ago
- k-mer similarity analysis pipeline☆21Updated 3 weeks ago
- Python package to query and analyse UniProt☆25Updated 4 years ago
- kProcessor: kmers processing framework.☆11Updated last year
- Automatically exported from code.google.com/p/qsimscan☆13Updated 3 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆34Updated last year
- Interpretable genotype-phenotype landscape modeling☆35Updated last year