Janga-Lab / PenguinLinks
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
☆14Updated 3 years ago
Alternatives and similar repositories for Penguin
Users that are interested in Penguin are comparing it to the libraries listed below
Sorting:
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆35Updated last year
- ☆38Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆30Updated 6 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆21Updated last month
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆15Updated 3 weeks ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 7 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- ☆33Updated 2 years ago
- ☆24Updated last month
- ☆31Updated 10 months ago
- Scoring GT/AG sites for improving spliced alignment☆46Updated 2 weeks ago
- Long read to rMATS☆32Updated 2 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- ☆29Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Updated 2 years ago