Janga-Lab / PenguinLinks
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
☆14Updated 3 years ago
Alternatives and similar repositories for Penguin
Users that are interested in Penguin are comparing it to the libraries listed below
Sorting:
- ☆36Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- ☆38Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆22Updated 2 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- ☆20Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆32Updated 6 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆15Updated last week
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 3 months ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Updated 5 months ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆34Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Structural variant merging tool☆55Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 8 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- A tool to detect structural variant☆17Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago