Alternatives and similar repositories for Penguin:

Users that are interested in Penguin are comparing it to the libraries listed below

• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• RouhanifardLab / PsiNanopore
  ☆10Updated last year
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 6 months ago
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 9 months ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆17Updated 9 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 4 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 9 months ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated last month
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆42Updated 3 months ago
• LappalainenLab / lorals
  ☆33Updated last year
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆15Updated last month
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• zhongzhd / ont_m6a_detection
  ☆10Updated 4 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆19Updated 2 weeks ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆17Updated 9 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 5 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 10 months ago
• a2iEditing / deNovo-Detect
  ☆11Updated 2 years ago
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated last year
• joshidhaivat / QAlign
  ☆9Updated 3 years ago
• Runsheng / trackcluster
  An analysis pipeline for Nanopore direct-RNA sequencing
  ☆12Updated 2 months ago
• comprna / radian
  Nanopore direct RNA basecaller
  ☆11Updated 2 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆11Updated 2 years ago