Janga-Lab / Penguin
Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
☆13Updated 3 years ago
Alternatives and similar repositories for Penguin
Users that are interested in Penguin are comparing it to the libraries listed below
Sorting:
- ☆10Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- isoCirc☆10Updated last year
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- ☆10Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆10Updated 4 years ago
- Analyse RNA feature distributions.☆16Updated 5 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated last month
- ☆18Updated last year
- ☆19Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago
- ☆35Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆16Updated 2 weeks ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆9Updated 3 years ago
- ☆14Updated last year
- Nanopore direct RNA basecaller☆11Updated 2 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- ☆12Updated 2 years ago
- ☆23Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 8 months ago