Discrete Distributional Differential Expression
☆22Jan 3, 2019Updated 7 years ago
Alternatives and similar repositories for D3E
Users that are interested in D3E are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 9 years ago
- ☆13Jun 24, 2016Updated 10 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆24Feb 14, 2021Updated 5 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Limix tutorials and demos☆11May 15, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆16Dec 11, 2018Updated 7 years ago
- Container class to represent genomic locations and support genomic analysis☆28Oct 26, 2026Updated last week
- Figure depicting the breadth of multimodal scRNA-seq technologies☆16Apr 3, 2019Updated 7 years ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Jun 2, 2020Updated 6 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆76Feb 14, 2026Updated 8 months ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- Mean Alterations Using Discrete Expression☆14Updated this week
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆60Aug 30, 2022Updated 4 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 28, 2026Updated last month
- University of Cambridge PhD thesis☆17Jan 8, 2021Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Oct 21, 2025Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- ☆33Mar 4, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genomic Features in Python from BioConductor's AnnotationHub☆22Oct 26, 2026Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- ☆13May 22, 2025Updated last year
- ☆12Jul 6, 2023Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data☆10Dec 23, 2019Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- Easily draw publication-quality figures of splicing quantitative trait loci☆16Feb 2, 2018Updated 8 years ago
- FASTAptamer: A Bioinformatic Toolkit for High-Throughput Sequence Analysis of Combinatorial Selections☆11Oct 7, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 10 years ago
- ☆18Aug 14, 2017Updated 9 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆19Jan 17, 2018Updated 8 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆68Sep 24, 2026Updated last month
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago