Alternatives and similar repositories for thesis

Users that are interested in thesis are comparing it to the libraries listed below

• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 4 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 4 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• HelenaLC / muscat-comparison
  ☆12Updated last year
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆38Updated last month
• cellatlas / human
  ☆44Updated last year
• Xinglab / PEGASAS
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆20Updated 3 years ago
• lcmmichielsen / scHPL
  ☆37Updated 8 months ago
• hemberg-lab / scfind
  ☆43Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆52Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• GreenleafLab / chromVARmotifs
  R package with motifs for use with chromVAR
  ☆28Updated 8 years ago
• sandberg-lab / txburst
  Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…
  ☆39Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆34Updated 5 months ago
• mathewchamberlain / SignacX
  Signac
  ☆25Updated 2 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆51Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆29Updated 4 years ago
• songlab-cal / scquint
  ☆18Updated last year
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆43Updated 3 weeks ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 3 years ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 3 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆25Updated 7 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated 2 weeks ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 6 years ago