broadinstitute / scRNA-SeqLinks
☆12Updated 2 years ago
Alternatives and similar repositories for scRNA-Seq
Users that are interested in scRNA-Seq are comparing it to the libraries listed below
Sorting:
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆28Updated 6 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- ☆37Updated 8 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 6 years ago
- TF analysis from epigenetic and Hi-C data☆18Updated 7 months ago
- kallisto index tag extractor☆20Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- Big data Regression for predicting DNase I hypersensitivity☆31Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year