wueric / SplicePlot
Easily draw publication-quality figures of splicing quantitative trait loci
☆16Updated 6 years ago
Alternatives and similar repositories for SplicePlot:
Users that are interested in SplicePlot are comparing it to the libraries listed below
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆28Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Cloud-based single-cell copy-number variation analysis tool☆48Updated last year
- ☆78Updated 10 years ago
- ☆24Updated 8 months ago
- Fast fusion detection using kallisto☆80Updated 3 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆31Updated 6 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Genomic Association Tester☆30Updated last year
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆65Updated 4 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- chia pet analysis software☆25Updated 6 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- ☆34Updated 5 years ago
- Identify cell types and pathways affected by genetic risk loci.☆36Updated 11 months ago
- Analysis from kallisto paper☆32Updated 8 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago