pachterlab / MBGBLHGP_2019Links
Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
☆23Updated 4 years ago
Alternatives and similar repositories for MBGBLHGP_2019
Users that are interested in MBGBLHGP_2019 are comparing it to the libraries listed below
Sorting:
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- scover☆24Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 2 years ago
- ☆12Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- ☆28Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- ☆14Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 7 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Gene Expression Decomposition and Integration☆19Updated 8 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago