A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
☆18Jun 11, 2021Updated 4 years ago
Alternatives and similar repositories for st_analysis
Users that are interested in st_analysis are comparing it to the libraries listed below
Sorting:
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆53Mar 7, 2023Updated 2 years ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 2 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- ☆12Sep 29, 2023Updated 2 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆85Apr 13, 2021Updated 4 years ago
- ☆12Mar 22, 2023Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated 3 weeks ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Dec 1, 2024Updated last year
- ☆89Updated this week
- ☆15Aug 17, 2023Updated 2 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 3 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated last month
- ☆21Jan 11, 2024Updated 2 years ago
- Discrete Distributional Differential Expression☆22Jan 3, 2019Updated 7 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆93May 24, 2024Updated last year
- ☆21Dec 23, 2024Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- Spatial One☆30Oct 31, 2024Updated last year
- ☆47Jul 24, 2025Updated 7 months ago