jfnavarro / st_analysisLinks
A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
☆18Updated 4 years ago
Alternatives and similar repositories for st_analysis
Users that are interested in st_analysis are comparing it to the libraries listed below
Sorting:
- An R package for performing cell typing in SMI and other single cell data☆43Updated 5 months ago
- ☆53Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated last year
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- ☆43Updated 4 years ago
- .h5mu files interface for Seurat☆32Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- Information-based dimensionality reduction☆29Updated 11 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 6 months ago
- Stitch multiple Visium slides together☆16Updated 3 weeks ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- ☆32Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Pipeline for designing custom probes against human genes☆19Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year