jfnavarro / st_analysisLinks
A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
☆18Updated 4 years ago
Alternatives and similar repositories for st_analysis
Users that are interested in st_analysis are comparing it to the libraries listed below
Sorting:
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- ☆53Updated 2 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- ☆23Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- ☆29Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 4 months ago
- ☆22Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- ☆19Updated 6 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- ☆43Updated 5 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- ☆48Updated 7 years ago