A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
☆18Jun 11, 2021Updated 4 years ago
Alternatives and similar repositories for st_analysis
Users that are interested in st_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated last month
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Apr 13, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reproducing the experiments of the DestVI paper☆24Feb 9, 2022Updated 4 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 3 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- ☆14Oct 7, 2019Updated 6 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Mar 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆14Aug 15, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 2 years ago
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last month
- ☆12Nov 20, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆66Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆95Feb 11, 2026Updated 3 months ago
- ☆13Dec 23, 2013Updated 12 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Mar 23, 2026Updated 2 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago