A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
☆18Jun 11, 2021Updated 4 years ago
Alternatives and similar repositories for st_analysis
Users that are interested in st_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Jun 30, 2022Updated 3 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆86Apr 13, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 6 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 2 years ago
- ☆13Oct 7, 2019Updated 6 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- ☆13Sep 29, 2023Updated 2 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Dec 7, 2023Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 2 years ago
- A pipeline creation tool using Snakemake☆13Updated this week
- ☆12Nov 20, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Nov 26, 2023Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".☆16Feb 26, 2021Updated 5 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆20Feb 27, 2013Updated 13 years ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆62Mar 16, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆91Feb 11, 2026Updated last month
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆13Dec 23, 2013Updated 12 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Mar 10, 2026Updated 2 weeks ago
- ☆15Aug 17, 2023Updated 2 years ago
- Python library for processing and visualizing Hi-C data☆20May 31, 2020Updated 5 years ago