☆29Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for slalom
Users that are interested in slalom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- ☆14Aug 30, 2025Updated 8 months ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 2 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Jun 29, 2022Updated 3 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Feb 20, 2018Updated 8 years ago
- ☆28Feb 6, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆26Mar 31, 2026Updated last month
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Jun 21, 2022Updated 3 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆171Jan 26, 2024Updated 2 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆25Jan 10, 2024Updated 2 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆76Jan 9, 2023Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 9 years ago
- ☆47Jun 21, 2019Updated 6 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- factor models for omics data☆38Apr 21, 2026Updated last week
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- ☆32Mar 4, 2024Updated 2 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Jun 6, 2019Updated 6 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…☆21Dec 18, 2025Updated 4 months ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆381Oct 3, 2024Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago