jw156605 / SingleSplice
Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gkv1525.full
☆21Updated 8 years ago
Alternatives and similar repositories for SingleSplice:
Users that are interested in SingleSplice are comparing it to the libraries listed below
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ☆17Updated 6 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- ☆12Updated 7 months ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- ☆45Updated 6 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆31Updated 5 years ago
- ☆12Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆28Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year