Chromatin interaction aware gene regulatory modeling with graph attention networks
☆30Feb 21, 2023Updated 3 years ago
Alternatives and similar repositories for GraphReg
Users that are interested in GraphReg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated last year
- ☆21Jan 1, 2022Updated 4 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Machine learning methods for DNA sequence analysis.☆66Sep 30, 2026Updated last week
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆46Jul 3, 2025Updated last year
- Statistically Significant loops from HiChIP data☆49Apr 17, 2024Updated 2 years ago
- TF MOtif Discovery from Importance SCOres☆193Oct 1, 2026Updated last week
- Importing and manipulating Hi-C data in R☆12Oct 5, 2026Updated last week
- ☆32Nov 7, 2023Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆50Updated this week
- ☆10Dec 11, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Evaluation framework for computationally inferred gene networks from single-cell data.☆20Oct 23, 2025Updated 11 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆48Apr 1, 2025Updated last year
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆18Jun 25, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Analyzing Hi-C data in R with HiCExperiment objects☆16Oct 6, 2026Updated last week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆102Sep 9, 2025Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆30Dec 3, 2018Updated 7 years ago
- EPInformer workflows for gene-expression prediction from DNA sequence, epigenomic signals, and chromatin contacts.☆63Jul 17, 2026Updated 2 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- RNA-seq prediction with deep convolutional neural networks.☆267Sep 30, 2026Updated last week
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆214May 19, 2018Updated 8 years ago
- ☆37Jan 27, 2025Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 7 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- ☆79May 27, 2026Updated 4 months ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 9 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sequential regulatory activity predictions with deep convolutional neural networks.☆475Jan 15, 2026Updated 8 months ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.☆52Aug 23, 2025Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Oct 5, 2026Updated last week
- Species-aware DNA language models capture regulatory elements and their evolution☆28Aug 21, 2023Updated 3 years ago
- Deep convolutional neural networks for biological motion analysis☆15Jan 26, 2019Updated 7 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year