Chromatin interaction aware gene regulatory modeling with graph attention networks
☆28Feb 21, 2023Updated 3 years ago
Alternatives and similar repositories for GraphReg
Users that are interested in GraphReg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 10 months ago
- ☆26Nov 7, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 6 months ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 10 months ago
- ☆20Jan 1, 2022Updated 4 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated last month
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- scover☆23Nov 3, 2023Updated 2 years ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆44Apr 27, 2026Updated last week
- TF MOtif Discovery from Importance SCOres☆178Feb 20, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated 2 years ago
- Importing and manipulating Hi-C data in R☆12Apr 19, 2026Updated 2 weeks ago
- ☆10Dec 11, 2024Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Apr 1, 2025Updated last year
- ☆25Dec 10, 2025Updated 4 months ago
- ☆71Apr 16, 2026Updated 2 weeks ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Updated this week
- Tutorial for AMSI BioInfoSummer 2018☆29Dec 3, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆102Sep 9, 2025Updated 7 months ago
- A useful tool for shuffling biological sequences while preserving the k-let counts☆14Apr 23, 2024Updated 2 years ago
- ☆34Jan 27, 2025Updated last year
- Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.☆210May 19, 2018Updated 7 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆44Jul 3, 2025Updated 10 months ago
- A Cellular Regulatory Network-Aware Transcriptomics Foundation Model☆37Dec 18, 2025Updated 4 months ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- Fully convolutional deep learning variant effect predictor architecture☆23Jan 3, 2024Updated 2 years ago
- Sequential regulatory activity predictions with deep convolutional neural networks.☆469Jan 15, 2026Updated 3 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Apr 27, 2026Updated last week
- Species-aware DNA language models capture regulatory elements and their evolution☆29Aug 21, 2023Updated 2 years ago
- Deep convolutional neural networks for biological motion analysis☆14Jan 26, 2019Updated 7 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆16Sep 26, 2017Updated 8 years ago