karbalayghareh / GraphRegLinks
Chromatin interaction aware gene regulatory modeling with graph attention networks
☆28Updated 2 years ago
Alternatives and similar repositories for GraphReg
Users that are interested in GraphReg are comparing it to the libraries listed below
Sorting:
- Code for reproducing the Sei manuscript results☆17Updated 4 years ago
- ☆27Updated 9 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Updated last year
- ☆25Updated last year
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆36Updated 3 years ago
- ☆25Updated 5 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- Analyses related to the Borzoi paper.☆25Updated last month
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 4 months ago
- ☆21Updated 2 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆91Updated 3 months ago
- ☆26Updated 2 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- ☆12Updated 2 years ago
- ☆18Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 4 months ago
- ☆13Updated 4 years ago
- ☆11Updated 2 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 2 weeks ago
- A python package for chromVAR☆33Updated 2 years ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆29Updated 3 years ago
- ☆69Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Updated 10 months ago