waldronlab / CNVWorkshop
Workshop for CNV analysis with Bioconductor
☆17Updated last month
Alternatives and similar repositories for CNVWorkshop:
Users that are interested in CNVWorkshop are comparing it to the libraries listed below
- ATACseqQC tutorials for BioC 2019 workshop☆15Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated last month
- Functional enrichment analysis of high-throughput omics data☆20Updated last month
- R package for benchmarking single cell analysis methods☆30Updated last year
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆21Updated last year
- ☆11Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last month
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 8 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Visualise correlation results and test significancies of these☆21Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- Transcript quantification import with automatic metadata detection☆67Updated 2 weeks ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago