normjam / benchmarkLinks
Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
☆19Updated 5 years ago
Alternatives and similar repositories for benchmark
Users that are interested in benchmark are comparing it to the libraries listed below
Sorting:
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- ☆37Updated 8 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 10 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- ☆12Updated last year
- ☆35Updated 3 months ago
- easy access to benchmark datasets☆50Updated 6 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- ☆28Updated 6 years ago
- RNA velocity validation☆22Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆41Updated 4 years ago
- ☆29Updated 2 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Automated marker-based annotation of cell types☆13Updated 2 years ago