normjam / benchmarkLinks
Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
☆19Updated 5 years ago
Alternatives and similar repositories for benchmark
Users that are interested in benchmark are comparing it to the libraries listed below
Sorting:
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- ☆12Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- ☆37Updated 8 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- ☆37Updated this week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆28Updated 6 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆41Updated 4 years ago
- ☆12Updated last year