yanwu2014 / swneLinks
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
☆106Updated 2 years ago
Alternatives and similar repositories for swne
Users that are interested in swne are comparing it to the libraries listed below
Sorting:
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆55Updated 11 months ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 months ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- An R-based interface for loom files☆67Updated 5 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- ☆29Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆33Updated 5 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 5 years ago
- Bayesian MCMC matrix factorization algorithm☆70Updated 4 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆75Updated 7 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 3 months ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Updated 6 years ago
- ☆43Updated 5 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago