yanwu2014 / swneLinks
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
☆105Updated 2 years ago
Alternatives and similar repositories for swne
Users that are interested in swne are comparing it to the libraries listed below
Sorting:
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆55Updated 7 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 8 months ago
- PHATE dimensionality reduction method implemented in R☆80Updated 4 years ago
- ☆29Updated 2 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated this week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- An r package that works as a wrapper to homologene☆46Updated last year
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 10 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Topics In Data Science and Bioinformatics☆79Updated last year
- Clone of the Bioconductor repository for the scran package.☆43Updated last year
- Bayesian MCMC matrix factorization algorithm☆69Updated last week
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆45Updated 2 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 8 months ago
- An analytics package for single cell data☆22Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 2 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 5 years ago