tjs23 / nuc_processingLinks
Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools
☆16Updated last month
Alternatives and similar repositories for nuc_processing
Users that are interested in nuc_processing are comparing it to the libraries listed below
Sorting:
- QC report generator for Hi-C pairs file☆12Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆29Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Poisson-based algorithm for stable inference of DNA Structure☆39Updated this week
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Chromatin domains bursting with flavor☆12Updated 5 years ago
- ☆21Updated 4 years ago
- ☆22Updated last year
- chia pet analysis software☆25Updated 6 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Transcription Factor Enrichment Analysis☆34Updated last week
- A toolkit for analyzing architectural stripes☆20Updated 7 months ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated this week
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆29Updated 4 years ago
- ☆16Updated 8 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- ☆29Updated 2 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated 2 weeks ago