Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools
☆15Sep 15, 2025Updated 8 months ago
Alternatives and similar repositories for nuc_processing
Users that are interested in nuc_processing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Particle dynamics and simulated annealing for chromosome structure calculation☆30Mar 15, 2024Updated 2 years ago
- a computational tool for analyzing single cell Hi-C data☆27Apr 23, 2024Updated 2 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆89Feb 28, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆119Jan 8, 2026Updated 5 months ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13May 6, 2026Updated last month
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆21Apr 8, 2024Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆21Sep 12, 2023Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆77Mar 28, 2026Updated 2 months ago
- Poisson-based algorithm for stable inference of DNA Structure☆40Updated this week
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- ☆23Jul 27, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆27Apr 16, 2026Updated last month
- ☆32Sep 28, 2019Updated 6 years ago
- an efficient Hi-C data processing pipeline☆18Mar 26, 2024Updated 2 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆28Aug 13, 2021Updated 4 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated 10 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 3 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13Jul 21, 2021Updated 4 years ago
- ☆74Nov 21, 2025Updated 6 months ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 5 years ago
- chia pet analysis software☆25Jan 17, 2019Updated 7 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆16Feb 6, 2026Updated 4 months ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated last year
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16May 25, 2026Updated 2 weeks ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- Hi-C data processing pipeline☆40Feb 27, 2024Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆94Aug 29, 2022Updated 3 years ago
- Scripts to create cartoons of 3D genomes☆12Feb 27, 2024Updated 2 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆17Mar 14, 2022Updated 4 years ago
- A supervised learning model based on Graph Neural Network to predict gene co-expression from chromatin contacts☆12Mar 22, 2023Updated 3 years ago