Alternatives and similar repositories for coloc2

Users that are interested in coloc2 are comparing it to the libraries listed below

• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 2 months ago
• clagiamba / moloc
  ☆36Updated 4 years ago
• explodecomputer / tryx
  ☆10Updated 5 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆24Updated 5 years ago
• WenjianBI / SPACox
  GWAS for survival analysis in large cohorts
  ☆21Updated last year
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆30Updated 10 months ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆28Updated 2 weeks ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆34Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated 2 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• globalbiobankmeta / multi-ancestry-pwmr
  Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
  ☆18Updated last year
• single-cell-genetics / limix_qtl
  ☆20Updated last month
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆30Updated last year
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆16Updated 4 years ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆40Updated 2 years ago
• MRC-Epid / pGWAS_discovery
  Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
  ☆24Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆32Updated last year
• hakyimlab / gtex-gwas-analysis
  ☆23Updated 4 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆33Updated 5 years ago