czbiohub-sf / scRFELinks
Single-cell identity definition using random forest modelling and recursive feature elimination
☆12Updated 5 years ago
Alternatives and similar repositories for scRFE
Users that are interested in scRFE are comparing it to the libraries listed below
Sorting:
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 10 months ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- represent each cell in UMAP plots as a pie chart☆16Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20Updated 3 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆42Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆12Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Information-based dimensionality reduction☆29Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 2 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last month
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year