czbiohub-sf / scRFELinks
Single-cell identity definition using random forest modelling and recursive feature elimination
☆12Updated 4 years ago
Alternatives and similar repositories for scRFE
Users that are interested in scRFE are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated 9 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 7 months ago
- ☆12Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Updated 8 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 9 months ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆12Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago