forrest-lab / scMatchLinks
scMatch: a single-cell gene expression profile annotation tool using reference datasets
☆21Updated 4 years ago
Alternatives and similar repositories for scMatch
Users that are interested in scMatch are comparing it to the libraries listed below
Sorting:
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- RNA velocity validation☆22Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆41Updated 4 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- ☆21Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated 10 months ago
- ☆28Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 5 years ago
- ☆23Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆29Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago