forrest-lab / scMatch
scMatch: a single-cell gene expression profile annotation tool using reference datasets
☆21Updated 4 years ago
Alternatives and similar repositories for scMatch:
Users that are interested in scMatch are comparing it to the libraries listed below
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- ☆39Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- ☆28Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- ☆22Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- RNA velocity validation☆23Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated 8 months ago
- post-clustering differential expression test☆35Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- An r package that works as a wrapper to homologene☆43Updated last year
- ☆37Updated 8 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- ☆21Updated 2 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 7 months ago
- Single-cell Case Control Analysis☆48Updated 4 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆29Updated last year