forrest-lab / scMatch
scMatch: a single-cell gene expression profile annotation tool using reference datasets
☆21Updated 4 years ago
Alternatives and similar repositories for scMatch:
Users that are interested in scMatch are comparing it to the libraries listed below
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- ☆29Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆40Updated 4 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆36Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆21Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- ☆28Updated 6 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- Single-cell Case Control Analysis☆48Updated 5 months ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago