forrest-lab / scMatchLinks
scMatch: a single-cell gene expression profile annotation tool using reference datasets
☆21Updated 5 years ago
Alternatives and similar repositories for scMatch
Users that are interested in scMatch are comparing it to the libraries listed below
Sorting:
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- ☆48Updated 7 years ago
- ☆28Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆21Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆43Updated 11 months ago
- Single-cell Case Control Analysis☆52Updated this week
- An analytics package for single cell data☆22Updated 3 years ago
- ☆42Updated 4 years ago
- ☆27Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 7 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- ☆55Updated 4 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year