epierson9 / ZIFALinks
Zero-inflated dimensionality reduction algorithm for single-cell data
☆109Updated 5 years ago
Alternatives and similar repositories for ZIFA
Users that are interested in ZIFA are comparing it to the libraries listed below
Sorting:
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- ☆85Updated 4 years ago
- ☆48Updated 6 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 6 months ago
- Collection of public scRNA-Seq datasets used by our group☆172Updated 4 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- Batch balanced KNN☆162Updated last year
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Updated 3 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- Accurate and robust imputation of scRNA-seq data☆94Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆111Updated 2 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆219Updated 5 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 4 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆106Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆211Updated last year
- Code for the MNN manuscript figures☆50Updated 6 years ago
- Subpopulation detection in high-dimensional single-cell data☆138Updated 4 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆72Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 4 months ago
- Geometry-preserving random sampling☆87Updated 7 months ago
- Scanpy use cases.☆85Updated 4 years ago
- Simple simulation of single-cell RNA sequencing data☆227Updated 3 weeks ago