epierson9 / ZIFALinks
Zero-inflated dimensionality reduction algorithm for single-cell data
☆111Updated 5 years ago
Alternatives and similar repositories for ZIFA
Users that are interested in ZIFA are comparing it to the libraries listed below
Sorting:
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆113Updated 2 months ago
- Single-cell Hierarchical Poisson Factorization☆74Updated 3 years ago
- ☆48Updated 6 years ago
- ☆85Updated 5 years ago
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆108Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆141Updated 5 years ago
- Biclustering algorithm☆58Updated 8 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 7 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆128Updated 4 years ago
- ☆29Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 10 months ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆101Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- ☆55Updated 10 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- Code for the MNN manuscript figures☆49Updated 7 years ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 8 years ago
- Batch balanced KNN☆176Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆85Updated 3 months ago