epierson9 / ZIFALinks
Zero-inflated dimensionality reduction algorithm for single-cell data
☆110Updated 5 years ago
Alternatives and similar repositories for ZIFA
Users that are interested in ZIFA are comparing it to the libraries listed below
Sorting:
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆111Updated 2 months ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- ☆85Updated 5 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆91Updated 5 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- ☆48Updated 6 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆91Updated 4 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 7 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- ☆100Updated 2 years ago
- Batch balanced KNN☆165Updated last year
- Scanpy use cases.☆85Updated 4 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆106Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆148Updated 5 months ago
- Code for the MNN manuscript figures☆50Updated 6 years ago
- ☆56Updated 5 years ago
- ☆29Updated 2 years ago
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- ☆84Updated 4 years ago
- Geometry-preserving random sampling☆87Updated 8 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Biclustering algorithm☆56Updated 7 years ago
- Subpopulation detection in high-dimensional single-cell data☆138Updated 4 years ago
- Python implementation of the Loom file format - http://loompy.org☆144Updated 7 months ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago