epierson9 / ZIFA
Zero-inflated dimensionality reduction algorithm for single-cell data
☆108Updated 4 years ago
Alternatives and similar repositories for ZIFA:
Users that are interested in ZIFA are comparing it to the libraries listed below
- ☆84Updated 4 years ago
- Single-cell RNA-seq Gene Expression Recovery☆110Updated 3 months ago
- Implementations in both Matlab and R of the SIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/n…☆111Updated 4 months ago
- Variational autoencoder for single cell RNA-seq datasets☆44Updated 7 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆122Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆204Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Updated 6 years ago
- Batch balanced KNN☆153Updated last year
- ☆49Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆135Updated 10 months ago
- Collection of public scRNA-Seq datasets used by our group☆168Updated 3 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆65Updated 6 years ago
- Accurate and robust imputation of scRNA-seq data☆95Updated 5 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆109Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆90Updated 4 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆56Updated 10 months ago
- ☆98Updated last year
- Bench-marking classification tools for scRNA-seq data☆183Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆135Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆147Updated 2 weeks ago
- Code for the MNN manuscript figures☆51Updated 6 years ago
- Biclustering algorithm☆56Updated 7 years ago
- Simple simulation of single-cell RNA sequencing data☆224Updated last week
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Tabula Muris Senis☆100Updated last year