Alternatives and similar repositories for scHPF:

Users that are interested in scHPF are comparing it to the libraries listed below

• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆73Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 5 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆17Updated 3 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 5 months ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆51Updated 2 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated last year
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 8 months ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆48Updated this week
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• klarman-cell-observatory / hdst
  ☆19Updated 5 years ago
• JSB-UCLA / scDesign2
  An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated
  ☆25Updated 5 months ago
• YosefLab / scone
  ☆53Updated last month
• Albluca / ElPiGraph.R
  An R package to construct Elastic Principal Graphs
  ☆22Updated 5 years ago
• shenorrLabTRDF / cellAlign
  ☆40Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆70Updated last year
• AllonKleinLab / SPRING
  ☆67Updated 6 years ago