simslab / scHPFLinks
Single-cell Hierarchical Poisson Factorization
☆73Updated 3 years ago
Alternatives and similar repositories for scHPF
Users that are interested in scHPF are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Population balance analysis☆44Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆76Updated 3 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆53Updated 4 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- Geometry-preserving random sampling☆95Updated last year
- ☆55Updated 10 months ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- Bayesian MCMC matrix factorization algorithm☆70Updated 3 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 weeks ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Updated 7 years ago
- ☆69Updated 7 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Updated 5 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆77Updated 4 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆85Updated 3 months ago
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago