simslab / scHPFLinks
Single-cell Hierarchical Poisson Factorization
☆73Updated 3 years ago
Alternatives and similar repositories for scHPF
Users that are interested in scHPF are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆59Updated 3 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Population balance analysis☆44Updated 6 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Updated 2 months ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Geometry-preserving random sampling☆95Updated last year
- ☆55Updated 9 months ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated last year
- ☆69Updated 7 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆51Updated this week
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆48Updated 7 years ago