Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
☆19May 6, 2019Updated 6 years ago
Alternatives and similar repositories for cellrangerRkit
Users that are interested in cellrangerRkit are comparing it to the libraries listed below
Sorting:
- ☆21Jul 4, 2017Updated 8 years ago
- ☆23Jan 20, 2021Updated 5 years ago
- ☆12Jul 13, 2018Updated 7 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Differential Correlation across Ranked Samples☆12May 31, 2023Updated 2 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Jun 21, 2022Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 4 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 7 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 7 months ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- ☆11May 30, 2023Updated 2 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- Discrete Distributional Differential Expression☆22Jan 3, 2019Updated 7 years ago
- Simple App to visualize single cell datasets☆20Apr 12, 2018Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 8 months ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- ☆17Jan 3, 2019Updated 7 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 4 months ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆79Dec 11, 2025Updated 3 months ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆17Jan 8, 2026Updated 2 months ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago