theislab / diffxpyLinks
Differential expression analysis for single-cell RNA-seq data.
☆202Updated 6 months ago
Alternatives and similar repositories for diffxpy
Users that are interested in diffxpy are comparing it to the libraries listed below
Sorting:
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- Python package to perform enrichment analysis from omics data.☆218Updated last week
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- Test genes for Spatial Variation☆175Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- A scanpy extension to analyse single-cell TCR and BCR data.☆237Updated this week
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆166Updated last week
- Panoramic stitching of single cell data☆287Updated last month
- muon is a multimodal omics Python framework☆245Updated last week
- Single-cell epigenomics analysis tools☆283Updated 3 weeks ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago
- RNA velocity estimation in Python☆172Updated 3 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆353Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆166Updated 4 months ago
- A tool for detecting somatic variants in single cell data☆212Updated 11 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆227Updated last month
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Batch balanced KNN☆169Updated last year
- Scanpy Tutorials.☆219Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆213Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆138Updated this week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆128Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆164Updated 2 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆167Updated 2 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated 3 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆205Updated 2 weeks ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆204Updated 2 years ago