theislab / diffxpy
Differential expression analysis for single-cell RNA-seq data.
☆193Updated last year
Related projects ⓘ
Alternatives and complementary repositories for diffxpy
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated this week
- Benchmarking computational single cell ATAC-seq methods☆177Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆154Updated 9 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆297Updated 4 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆137Updated this week
- Python package to perform enrichment analysis from omics data.☆166Updated 2 months ago
- A tool for semi-automatic cell type classification☆296Updated 5 months ago
- Detect doublets in single-cell RNA-seq data☆138Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆186Updated 2 months ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆220Updated this week
- Test genes for Spatial Variation☆145Updated 6 months ago
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆147Updated 4 months ago
- Clustering scRNAseq by genotypes☆168Updated this week
- Single-cell epigenomics analysis tools☆231Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆306Updated last year
- scDIOR: Single cell data IO softwaRe☆134Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆184Updated 7 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆143Updated last year
- Bench-marking classification tools for scRNA-seq data☆183Updated 2 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆188Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- Cell types enrichment analysis☆184Updated 5 months ago
- muon is a multimodal omics Python framework☆218Updated 3 weeks ago
- Conversion between scRNA-seq objects☆150Updated last week
- A guide to using a Seurat object in conjunction with RNA Velocity☆132Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data