mikelove / zinbwave-deseq2Links
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
β31Updated 4 years ago
Alternatives and similar repositories for zinbwave-deseq2
Users that are interested in zinbwave-deseq2 are comparing it to the libraries listed below
Sorting:
- π§ Navigate single-cell RNA-seq datasets in your web browser.β29Updated 2 years ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- 𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.β¦β28Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.β29Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.β16Updated 6 years ago
- SCASA: Single cell transcript quantification toolβ21Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencingβ29Updated 4 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Linksβ16Updated 2 years ago
- scoverβ23Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β28Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing dataβ11Updated 2 years ago
- kallisto index tag extractorβ20Updated 6 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β20Updated 6 months ago
- R package for haplotype phasing using single-cell RNA-seq dataβ13Updated 8 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last year
- Differential ATAC-seq toolkitβ27Updated last year
- Single cell interactive plotting toolsβ23Updated 5 years ago
- A simple, intuitive and Efficient single cell binary Data Storage formatβ15Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.β28Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experimentsβ43Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneitβ¦β37Updated last year
- Explore the cancer relevance of your gene listβ51Updated 5 months ago
- Integrating zingeR with ZINB-WaVE weightsβ24Updated 7 years ago
- β21Updated 8 years ago
- ireadβ25Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ43Updated 3 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marksβ12Updated 4 years ago
- β10Updated 6 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing dataβ16Updated 8 months ago