mikelove / zinbwave-deseq2Links
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
β31Updated 4 years ago
Alternatives and similar repositories for zinbwave-deseq2
Users that are interested in zinbwave-deseq2 are comparing it to the libraries listed below
Sorting:
- 𧬠π¦ A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.β¦β28Updated 3 years ago
- Bead-based single-cell atac processingβ33Updated 3 years ago
- Differential ATAC-seq toolkitβ27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.β16Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.β29Updated 11 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencingβ28Updated 4 years ago
- Repository for signature genes from Immune Cell Atlasβ18Updated 5 years ago
- scoverβ23Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β28Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platformsβ19Updated 2 years ago
- SCASA: Single cell transcript quantification toolβ21Updated last year
- kallisto index tag extractorβ20Updated 6 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicingβ18Updated last year
- Single cell interactive plotting toolsβ23Updated 5 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expressionβ12Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing dataβ11Updated 2 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"β19Updated 5 months ago
- Detecting Aberrant Splicing Events from RNA-sequencing dataβ16Updated 7 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq datasetβ29Updated 5 years ago
- Explore the cancer relevance of your gene listβ51Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.β28Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weightsβ24Updated 7 years ago
- R package for haplotype phasing using single-cell RNA-seq dataβ13Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneitβ¦β37Updated last year
- β14Updated 6 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"β23Updated 4 years ago
- Create QC and summary reports for Alevin outputβ32Updated 3 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimatesβ27Updated 3 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq dataβ2Updated 4 years ago