TheLaueLab / nuc_dynamicsLinks
Particle dynamics and simulated annealing for chromosome structure calculation
☆18Updated 8 years ago
Alternatives and similar repositories for nuc_dynamics
Users that are interested in nuc_dynamics are comparing it to the libraries listed below
Sorting:
- Chromatin States Map in mouse embryonic stem cell☆19Updated 7 years ago
- ☆17Updated 7 years ago
- Tutorial Website☆63Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Links to ATAC-seq analysis tools☆77Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ATAC-seq processing pipeline☆34Updated 3 years ago
- ☆18Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- ☆22Updated 5 years ago
- ☆38Updated 5 years ago
- ☆12Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Updated 2 years ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Updated last year
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- IDR☆30Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Updated 7 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆25Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago