TheLaueLab / nuc_dynamicsLinks
Particle dynamics and simulated annealing for chromosome structure calculation
☆18Updated 8 years ago
Alternatives and similar repositories for nuc_dynamics
Users that are interested in nuc_dynamics are comparing it to the libraries listed below
Sorting:
- ☆20Updated 6 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- Chromatin States Map in mouse embryonic stem cell☆19Updated 7 years ago
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆17Updated 7 years ago
- ☆53Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 4 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ☆34Updated 6 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- ☆25Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆23Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 2 weeks ago
- Analysis of Paired-Tag datasets☆43Updated 2 years ago
- Tutorial Website☆63Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- ☆38Updated 5 years ago
- An R package to time somatic mutations☆65Updated 5 years ago