GGiecold-zz / ECLAIR
Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.
☆14Updated 8 years ago
Alternatives and similar repositories for ECLAIR:
Users that are interested in ECLAIR are comparing it to the libraries listed below
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- ☆12Updated 11 months ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 8 months ago
- Supplement to the report in https://greenelab.github.io/czi-hca-report/☆9Updated 6 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆26Updated 6 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 5 years ago
- An algorithm for mapping cell state transitions.☆25Updated last year
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆53Updated 2 years ago
- ☆28Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- ☆12Updated 5 years ago
- ☆11Updated 2 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Updated 9 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 9 months ago
- ☆19Updated 7 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Updated 2 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆12Updated 7 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆35Updated 3 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- This repository is retired software☆12Updated 9 years ago
- ☆16Updated 6 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆44Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 5 years ago
- ☆11Updated 7 years ago
- Regulatory networks with Direct Information in python☆39Updated last year
- ☆37Updated 8 years ago