GGiecold-zz / ECLAIRLinks
Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.
☆14Updated 8 years ago
Alternatives and similar repositories for ECLAIR
Users that are interested in ECLAIR are comparing it to the libraries listed below
Sorting:
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆55Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- ☆12Updated last year
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 6 years ago
- ☆16Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated last year
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Supplement to the report in https://greenelab.github.io/czi-hca-report/☆9Updated 6 years ago
- ☆29Updated 2 years ago
- ☆37Updated last week
- Generate cellular maps of differentiation manifolds with complex topologies.☆26Updated 7 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- ☆19Updated 7 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 5 years ago
- ☆11Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Updated 7 years ago
- easy access to benchmark datasets☆50Updated 6 years ago