☆16Dec 11, 2018Updated 7 years ago
Alternatives and similar repositories for cluster_benchmarking_code
Users that are interested in cluster_benchmarking_code are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 4 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clustering through Imputation and Dimensionality Reduction☆64Sep 21, 2017Updated 9 years ago
- ☆11Sep 5, 2018Updated 8 years ago
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- ☆33Mar 4, 2024Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- ☆10Dec 29, 2023Updated 2 years ago
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 3 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Discrete Distributional Differential Expression☆22Jan 3, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 7 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆112Dec 16, 2022Updated 3 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 8 years ago
- ☆14Nov 3, 2017Updated 8 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 5 months ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 7 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆56Dec 15, 2018Updated 7 years ago
- Clustering cells from single cell RNA seq assays☆46Nov 19, 2018Updated 7 years ago
- A common data format and inference environment for single-cell trajectories 📦☆20Mar 31, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆20Oct 29, 2019Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated 2 years ago
- Quantnet: SFE quantlets☆11Oct 27, 2025Updated 11 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆343Updated this week
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆35Mar 24, 2022Updated 4 years ago
- Geared simulations: Easy computations over posterior simulations☆12Sep 28, 2015Updated 11 years ago
- Interactive benchmarking of ranking and assignment methods☆17May 14, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- post-clustering differential expression test☆37May 28, 2019Updated 7 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- ☆20Jan 9, 2024Updated 2 years ago
- Tools for processing UMI RNA-tag data☆133Apr 30, 2026Updated 5 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆56Feb 15, 2021Updated 5 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆127Jun 28, 2021Updated 5 years ago