arnavm / multimodal-scRNA-seqLinks
Figure depicting the breadth of multimodal scRNA-seq technologies
☆16Updated 6 years ago
Alternatives and similar repositories for multimodal-scRNA-seq
Users that are interested in multimodal-scRNA-seq are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- ☆34Updated 6 years ago
- ☆23Updated 6 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Exon-Intron Split Analysis (EISA) in R☆16Updated 3 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago