Probabilistic single-cell pseudotime with Edward+Tensorflow
☆12Oct 5, 2017Updated 8 years ago
Alternatives and similar repositories for ouijaflow
Users that are interested in ouijaflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- ☆22Jul 4, 2017Updated 9 years ago
- Discrete Distributional Differential Expression☆23Jan 3, 2019Updated 7 years ago
- Implementation of the Tower Method, a novel approach to handling missing values.☆13Mar 12, 2024Updated 2 years ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- ☆14Aug 30, 2025Updated 10 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- software package for integrative genetic association analysis☆37Jul 8, 2023Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 5 months ago
- Response to blog post about Salmon☆37Sep 3, 2017Updated 8 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- Fast Inference of Networks from Directed Regulations☆23Dec 7, 2023Updated 2 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆94Jun 22, 2022Updated 4 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Feb 8, 2023Updated 3 years ago
- Exploring dimension-reduced embeddings☆111Jul 6, 2022Updated 4 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- manifold metric and correction techniques for (Bayesian) GPLVM from GPy☆12Mar 1, 2020Updated 6 years ago
- ☆12Jul 6, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- Code for implementing Mendelian randomization investigations☆20Nov 9, 2015Updated 10 years ago
- logistic factor analysis☆16Jan 29, 2026Updated 5 months ago
- SV☆15May 3, 2018Updated 8 years ago
- ☆15Jun 3, 2019Updated 7 years ago
- python convenience functions for working with Stan models (via pystan)☆13Jan 3, 2018Updated 8 years ago
- Workshop for CNV analysis with Bioconductor☆17Jan 6, 2025Updated last year