quon-titative-biology / scAlign
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
☆34Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for scAlign
- A study to compare methods for clustering of scRNA-seq data☆41Updated 4 months ago
- ☆37Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆34Updated 6 months ago
- ☆29Updated 8 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Fast motif matching in R☆43Updated 9 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- RNA velocity validation☆23Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- scRNAseq integration with triplet neural networks☆39Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- ☆29Updated 5 years ago
- ☆29Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆19Updated 4 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago