quon-titative-biology / scAlignLinks
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
☆39Updated 4 years ago
Alternatives and similar repositories for scAlign
Users that are interested in scAlign are comparing it to the libraries listed below
Sorting:
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Algorithms for single-cell analysis☆29Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ☆43Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- CiteFuse:☆28Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- ☆26Updated 7 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Updated last year
- An analytics package for single cell data☆22Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- Marker gene selection from scRNA-seq data☆15Updated 5 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- ☆15Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago