quon-titative-biology / scAlignLinks
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
☆39Updated 3 years ago
Alternatives and similar repositories for scAlign
Users that are interested in scAlign are comparing it to the libraries listed below
Sorting:
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆43Updated 4 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- ☆28Updated 6 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- CiteFuse:☆28Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Single cell interactive plotting tools☆24Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 2 months ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- ☆25Updated 5 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- ☆21Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago