Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
☆82Jan 20, 2026Updated 2 months ago
Alternatives and similar repositories for SignatureAnalyzer
Users that are interested in SignatureAnalyzer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆181Mar 7, 2026Updated last month
- ☆25Aug 1, 2022Updated 3 years ago
- CLUMPS adapted to post-translational modifications.☆10May 22, 2025Updated 10 months ago
- ☆85Apr 17, 2025Updated 11 months ago
- ☆12Nov 6, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package containing useful functions for mutational signature analysis☆86Mar 30, 2026Updated last week
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- A General Framework for Consensus Partitioning☆64Jan 30, 2026Updated 2 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 10 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated last year
- Model-based tumour subclonal deconvolution using population genetics☆35Dec 2, 2025Updated 4 months ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆486Feb 25, 2026Updated last month
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆346Mar 14, 2026Updated 3 weeks ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medici…☆18Feb 2, 2026Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated last month
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated 9 months ago
- ☆14Oct 9, 2025Updated 6 months ago
- ☆38Feb 27, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- MutSig2CV from Lawrence et al. 2014☆33Aug 18, 2020Updated 5 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 11 months ago
- ☆13Mar 20, 2021Updated 5 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year