SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
☆119Feb 8, 2026Updated 2 months ago
Alternatives and similar repositories for SigProfilerMatrixGenerator
Users that are interested in SigProfilerMatrixGenerator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆181Mar 7, 2026Updated last month
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Feb 8, 2026Updated 2 months ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 2 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆76Feb 19, 2026Updated last month
- SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be use…☆20Feb 10, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- An R wrapper for running the SigProfilerPlotting framework☆10Jan 29, 2026Updated 2 months ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 8 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Dec 23, 2023Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated last month
- SigProfilerSingleSample allows attributing a known set of mutational signatures to an individual sample. The tool identifies the activity…☆23Jan 17, 2025Updated last year
- DriverPower☆26Jan 18, 2025Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆86Mar 30, 2026Updated last week
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 6 years ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Updated this week
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Mar 26, 2026Updated 2 weeks ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated last month
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated 2 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated last month
- ☆85Apr 17, 2025Updated 11 months ago
- An R package to time somatic mutations☆68Dec 12, 2020Updated 5 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆71Jan 20, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Apr 7, 2022Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆82Jan 20, 2026Updated 2 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 2 weeks ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year