morrislab / phylowgs
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
☆108Updated 2 years ago
Alternatives and similar repositories for phylowgs:
Users that are interested in phylowgs are comparing it to the libraries listed below
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Bayesian genotyper for structural variants☆131Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- ☆68Updated last year
- ☆72Updated 2 weeks ago
- Battenberg R package for subclonal copynumber estimation☆86Updated last month
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆118Updated last year
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆148Updated 8 months ago
- ☆116Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆109Updated last year
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆107Updated 6 months ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- deconstructSigs☆141Updated 2 years ago
- ☆68Updated 2 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago