morrislab / phylowgs

Related projects: ⓘ

• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆107Updated 2 months ago
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆51Updated 3 years ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆68Updated 3 years ago
• GreenleafLab / NucleoATAC
  nucleosome calling using ATAC-seq
  ☆105Updated 3 years ago
• gavinha / TitanCNA
  Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
  ☆93Updated 3 years ago
• taylor-lab / hotspots
  Identifying recurrent mutations in cancer
  ☆37Updated 3 years ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆153Updated 2 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆52Updated 5 years ago
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 5 years ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆141Updated 4 years ago
• TrinityCTAT / Trinity_CTAT
  ☆115Updated last year
• jernst98 / ChromHMM
  ☆71Updated 8 months ago
• humanlongevity / HLA
  xHLA: Fast and accurate HLA typing from short read sequence data
  ☆102Updated 11 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆125Updated 3 years ago
• broadinstitute / PhylogicNDT
  ☆69Updated 4 months ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆116Updated 6 years ago
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆59Updated last year
• ratschlab / spladder
  Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
  ☆103Updated 4 months ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆115Updated 11 months ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆100Updated last month
• griffithlab / regtools
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
  ☆120Updated 3 weeks ago
• parklab / ShatterSeek
  ☆65Updated last year
• rhshah / IMPACT-Pipeline
  Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
  ☆55Updated 3 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆134Updated 5 months ago
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆92Updated 3 years ago
• daler / metaseq
  Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
  ☆87Updated 4 years ago
• BradnerLab / pipeline
  bradner lab computation pipeline scripts
  ☆52Updated 2 years ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆98Updated 2 years ago
• Wedge-lab / battenberg
  Battenberg R package for subclonal copynumber estimation
  ☆77Updated last month
• ding-lab / CharGer
  Characterization of Germline variants
  ☆96Updated 2 years ago