morrislab / phylowgsLinks
Application for inferring subclonal composition and evolution from whole-genome sequencing data.
☆112Updated 2 years ago
Alternatives and similar repositories for phylowgs
Users that are interested in phylowgs are comparing it to the libraries listed below
Sorting:
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆71Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆109Updated last month
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆100Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆106Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆73Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- ☆88Updated last month
- A tool for bigWig files.☆119Updated 7 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- bradner lab computation pipeline scripts☆54Updated last week
- ☆69Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- deconstructSigs☆143Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆131Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year