Application for inferring subclonal composition and evolution from whole-genome sequencing data.
☆115Oct 12, 2022Updated 3 years ago
Alternatives and similar repositories for phylowgs
Users that are interested in phylowgs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆71Aug 22, 2021Updated 4 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆172Jan 28, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Feb 19, 2017Updated 9 years ago
- ☆86Apr 17, 2025Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 8 years ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 2 months ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆44Jun 10, 2016Updated 10 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆37Mar 5, 2021Updated 5 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- ASCAT R package☆202Feb 12, 2026Updated 5 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- Git repo for CONIPHER tree building☆27Mar 20, 2025Updated last year
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 5 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Jul 8, 2026Updated 2 weeks ago
- ☆13Jun 21, 2017Updated 9 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆237May 15, 2025Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆134Jan 6, 2021Updated 5 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 5 months ago
- ☆12Dec 8, 2021Updated 4 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 3 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆101Apr 20, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberration…☆76Aug 20, 2021Updated 4 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆125Aug 19, 2020Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago