delocalizer / streammdLinks
Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
☆23Updated 2 years ago
Alternatives and similar repositories for streammd
Users that are interested in streammd are comparing it to the libraries listed below
Sorting:
- ☆16Updated 10 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- ☆13Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated last week
- ☆12Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Hidden Markov Model based Copy number caller☆20Updated this week
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- ☆20Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Population-wide Deletion Calling☆35Updated 7 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Structural variant pipeline☆17Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago