delocalizer / streammdLinks
Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
☆23Updated 2 years ago
Alternatives and similar repositories for streammd
Users that are interested in streammd are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆16Updated 11 months ago
- ☆13Updated 3 years ago
- ☆12Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 2 weeks ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Population-wide Deletion Calling☆35Updated 8 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- ☆20Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 10 months ago
- Split a BAM file by haplotype support☆16Updated 8 years ago
- Structural variant pipeline☆17Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- ☆23Updated 2 weeks ago