delocalizer / streammd
Single-pass probabilistic duplicate marking of alignments with a Bloom filter.
☆22Updated last year
Alternatives and similar repositories for streammd:
Users that are interested in streammd are comparing it to the libraries listed below
- ☆16Updated 2 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last week
- Unfazed by genomic variant phasing☆26Updated 10 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- ☆13Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆12Updated 3 years ago
- ☆22Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated this week
- Location of public benchmarking; primarily final results☆18Updated last month
- ☆11Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 8 months ago
- ☆14Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago