Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
☆485Updated this week
Alternatives and similar repositories for maftools
Users that are interested in maftools are comparing it to the libraries listed below
Sorting:
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆411Feb 20, 2026Updated last week
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- ASCAT R package☆199Feb 12, 2026Updated 2 weeks ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆158Dec 25, 2025Updated 2 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆100Oct 4, 2024Updated last year
- Genome data visualizations☆220Jan 10, 2026Updated last month
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 2 weeks ago
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- TCGAbiolinks☆345Oct 7, 2025Updated 4 months ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated last month
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆323Mar 6, 2025Updated 11 months ago
- Gene set variation analysis☆231Updated this week
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 9 months ago
- Make Complex Heatmaps☆1,471Jan 30, 2026Updated last month
- Inferring CNV from Single-Cell RNA-Seq☆651Nov 14, 2025Updated 3 months ago
- An R package for inferring the subclonal architecture of tumors☆122Oct 13, 2023Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- Structural variation and indel detection by local assembly☆252Sep 16, 2025Updated 5 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆521Jan 5, 2026Updated last month
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Jan 5, 2026Updated last month
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last week
- Various algorithms for analysing genomics data☆264Updated this week
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- Count bases in BAM/CRAM files☆324Jan 31, 2022Updated 4 years ago
- Copy number calling and variant classification using targeted short read sequencing☆144Feb 19, 2026Updated last week
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆118Aug 19, 2020Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Nov 6, 2025Updated 3 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,421Updated this week
- Fast and accurate gene fusion detection from RNA-Seq data☆262Sep 21, 2025Updated 5 months ago
- Java utilities for Bioinformatics☆518Feb 6, 2026Updated 3 weeks ago