Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
☆486Feb 25, 2026Updated last month
Alternatives and similar repositories for maftools
Users that are interested in maftools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆416Mar 13, 2026Updated 3 weeks ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆100Oct 4, 2024Updated last year
- Genome data visualizations☆222Jan 10, 2026Updated 3 months ago
- ASCAT R package☆199Feb 12, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆159Dec 25, 2025Updated 3 months ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Apr 1, 2026Updated last week
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated last month
- TCGAbiolinks☆347Oct 7, 2025Updated 6 months ago
- identifying mutational significance in cancer genomes☆62Nov 16, 2022Updated 3 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆173Jan 28, 2026Updated 2 months ago
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Nov 22, 2022Updated 3 years ago
- An R package for inferring the subclonal architecture of tumors☆122Mar 15, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆327Mar 6, 2025Updated last year
- Gene set variation analysis☆237Updated this week
- dN/dS methods to quantify selection in cancer and somatic evolution☆232May 15, 2025Updated 10 months ago
- Make Complex Heatmaps☆1,484Apr 2, 2026Updated last week
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Apr 20, 2021Updated 4 years ago
- Inferring CNV from Single-Cell RNA-Seq☆662Nov 14, 2025Updated 4 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Nov 20, 2020Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆204Jan 5, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆120Aug 19, 2020Updated 5 years ago
- Plot structural variant signals from many BAMs and CRAMs☆563Jul 13, 2024Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆533Updated this week
- ☆78Jul 12, 2023Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last month
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆181Mar 7, 2026Updated last month
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Structural variation and indel detection by local assembly☆255Mar 17, 2026Updated 3 weeks ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆98Aug 1, 2024Updated last year
- Various algorithms for analysing genomics data☆272Updated this week
- Count bases in BAM/CRAM files☆323Jan 31, 2022Updated 4 years ago
- Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.☆82Jan 20, 2026Updated 2 months ago