im3sanger / dndscvLinks
dN/dS methods to quantify selection in cancer and somatic evolution
☆231Updated 8 months ago
Alternatives and similar repositories for dndscv
Users that are interested in dndscv are comparing it to the libraries listed below
Sorting:
- ASCAT R package☆195Updated 4 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆228Updated last year
- Detecting sites of genomic enrichment☆198Updated 2 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 2 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last month
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆177Updated last year
- ☆157Updated 3 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆197Updated last year
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆174Updated last week
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆147Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆96Updated 4 years ago
- deconstructSigs☆144Updated 2 years ago
- Learning the Variant Call Format☆148Updated 6 months ago
- R package for DNA methylation analysis☆247Updated 2 weeks ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆160Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆293Updated 2 months ago
- ☆157Updated 8 months ago
- ☆145Updated 7 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆131Updated last month
- Application for making ENCODE Blacklists☆332Updated 4 years ago