ChristofferFlensburg / superFreqLinks
Analysis pipeline for cancer sequencing data
☆110Updated 2 months ago
Alternatives and similar repositories for superFreq
Users that are interested in superFreq are comparing it to the libraries listed below
Sorting:
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆106Updated 2 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- deconstructSigs☆142Updated 2 years ago
- Transcript quantification import for modular pipelines☆140Updated 2 weeks ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 7 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆60Updated 2 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆82Updated last week
- Fuji plot—a circos representation of multiple GWAS results—☆89Updated last month
- Statistical Analysis of RNA-Seq Tools☆107Updated 3 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Learning the Variant Call Format☆140Updated last year
- MOsaic CHromosomal Alterations (MoChA) caller☆86Updated 5 months ago
- Copy number calling and variant classification using targeted short read sequencing☆136Updated 2 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆149Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆78Updated 11 years ago
- Rare variant test software for next generation sequencing data☆139Updated 3 years ago
- Battenberg R package for subclonal copynumber estimation☆88Updated last week