ChristofferFlensburg / superFreqLinks
Analysis pipeline for cancer sequencing data
☆112Updated 9 months ago
Alternatives and similar repositories for superFreq
Users that are interested in superFreq are comparing it to the libraries listed below
Sorting:
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆107Updated 3 years ago
- R package for bcbio RNA-seq analysis.☆63Updated last year
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆62Updated 8 months ago
- Battenberg algorithm and associated implementation script☆53Updated 5 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated 2 years ago
- Transcript quantification import for modular pipelines☆142Updated 4 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- R package designed to simplify structural variant analysis☆74Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- deconstructSigs☆144Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆148Updated 5 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- R package for genomic feature analysis and visualization☆79Updated 9 months ago
- ☆78Updated 11 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆55Updated last year
- Collection of CGAT NGS Pipelines☆43Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆100Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Updated 8 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 5 years ago
- Copy number vaiation detection from SNP arrays☆96Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 8 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- ☆74Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 4 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Updated 2 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Learning the Sequence Alignment/Map format☆112Updated 5 months ago