DeveauP / QuantumCloneLinks
Clonal reconstruction from HTS data
☆10Updated 4 years ago
Alternatives and similar repositories for QuantumClone
Users that are interested in QuantumClone are comparing it to the libraries listed below
Sorting:
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago
- GWAS and rare variants tests at high speed using regenie☆16Updated last month
- Allele frequency filter app☆14Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 5 months ago
- ☆11Updated last year
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆14Updated 10 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆13Updated 8 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago