DeveauP / QuantumCloneLinks
Clonal reconstruction from HTS data
☆10Updated 4 years ago
Alternatives and similar repositories for QuantumClone
Users that are interested in QuantumClone are comparing it to the libraries listed below
Sorting:
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ☆13Updated 8 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Updated 5 months ago
- ☆18Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Allele frequency filter app☆14Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆19Updated 6 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- ☆23Updated 2 weeks ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- ☆14Updated 5 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated 2 years ago
- Differential Mutation Analysis☆11Updated 5 years ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Updated 3 weeks ago