hartwigmedical / platinum
Run multiple Pipeline5 instances at once
☆10Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for platinum
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- ☆14Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆47Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 4 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆22Updated last year
- ☆14Updated 2 years ago
- ☆29Updated 6 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last month
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆18Updated 4 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆18Updated last year
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆16Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago
- R package for CRAG☆11Updated 10 months ago
- RNA editing tests☆16Updated 4 years ago
- ☆40Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆16Updated 5 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago